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yibA putative lyase containing HEAT-repeat [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948108, updated on 17-Dec-2024

Summary

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Official Symbol
yibA
Official Full Name
putative lyase containing HEAT-repeat
Primary source
ECOCYC:EG11187
Locus tag
b3594
See related
ASAP:ABE-0011744
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3583
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Genomic context

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Sequence:
NC_000913.3 (3766337..3767179)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutathione transferase-like protein YibF Neighboring gene rhs element protein RhsA Neighboring gene pseudo Neighboring gene tetratricopeptide-like domain-containing protein YibG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of the rhsA locus from Escherichia coli K-12 and comparison of rhsA with other members of the rhs multigene family. Feulner G, et al. J Bacteriol, 1990 Jan. PMID 2403547, Free PMC Article
  2. Escherichia coli genes that reduce the lethal effects of stress. Han X, et al. BMC Microbiol, 2010 Feb 4. PMID 20128927, Free PMC Article
  3. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
  4. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
  5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to antibiotic IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
putative lyase containing HEAT-repeat

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3766337..3767179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418051.1 putative lyase containing HEAT-repeat [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418051.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1C9CJB4, A0A775TGP1
    Conserved Domains (2) summary
    PRK09687
    Location:1 → 280
    PRK09687; putative lyase; Provisional
    sd00044
    Location:92 → 117
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
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