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yiaB PF05360 family inner membrane protein YiaB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948152, updated on 3-Dec-2024

Summary

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Official Symbol
yiaB
Official Full Name
PF05360 family inner membrane protein YiaB
Primary source
ECOCYC:EG11267
Locus tag
b3563
See related
ASAP:ABE-0011634
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3552
Summary
Topology mapped using protein fusions. yiaB and yiaA are paralogs. [More information is available at EcoGene: EG11267]. Protein topology in the inner membrane has been determined . [More information is available at EcoCyc: EG11267].
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Genomic context

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Sequence:
NC_000913.3 (3727407..3727748, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene O-acetyltransferase WecH Neighboring gene PF05360 family inner membrane protein YiaA Neighboring gene xylulokinase Neighboring gene ncRNA Neighboring gene xylose isomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli. Lawlis VB, et al. Appl Environ Microbiol, 1984 Jan. PMID 6320721, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF05360 family inner membrane protein YiaB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3727407..3727748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418020.2 PF05360 family inner membrane protein YiaB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418020.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2Z3T1
    Conserved Domains (1) summary
    PRK11403
    Location:1 → 113
    PRK11403; hypothetical protein; Provisional
Nucleotide Protein
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