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yicH AsmA family protein YicH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948171, updated on 3-Dec-2024

Summary

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Official Symbol
yicH
Official Full Name
AsmA family protein YicH
Primary source
ECOCYC:EG11684
Locus tag
b3655
See related
ASAP:ABE-0011949
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3645
Summary
Sequence similarity suggests that YicH may containe -barrel structure(s) . [More information is available at EcoCyc: EG11684].
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Genomic context

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Sequence:
NC_000913.3 (3830457..3832166)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutamate:sodium symporter Neighboring gene xanthine:H(+) symporter XanP Neighboring gene alpha-D-xyloside xylohydrolase Neighboring gene putative xyloside transporter YicJ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  3. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
AsmA family protein YicH

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3830457..3832166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418112.1 AsmA family protein YicH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418112.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FV43, A0A7L7EE68, A0A8S7EI93
    Conserved Domains (1) summary
    pfam05170
    Location:17 → 522
    AsmA; AsmA family
Nucleotide Protein
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