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yidR DUF3748 domain-containing galacturonate catabolism protein YidR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948198, updated on 3-Dec-2024

Summary

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Official Symbol
yidR
Official Full Name
DUF3748 domain-containing galacturonate catabolism protein YidR
Primary source
ECOCYC:EG11713
Locus tag
b3689
See related
ASAP:ABE-0012065
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3681
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Genomic context

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Sequence:
NC_000913.3 (3868062..3869309, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene small heat shock protein IbpA Neighboring gene DUF1375 domain-containing putative lipoprotein YidQ Neighboring gene colicin M resistance protein Neighboring gene D-galactonate:H(+) symporter Neighboring gene D-galactonate dehydratase Neighboring gene 2-dehydro-3-deoxy-6-phosphogalactonate aldolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomewide landscape of gene-metabolome associations in Escherichia coli. Fuhrer T, et al. Mol Syst Biol, 2017 Jan 16. PMID 28093455, Free PMC Article
  2. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
  3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within galacturonate catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DUF3748 domain-containing galacturonate catabolism protein YidR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3868062..3869309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418144.3 DUF3748 domain-containing galacturonate catabolism protein YidR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418144.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1R1K899, A0A1X3JAC7
    Conserved Domains (2) summary
    pfam12566
    Location:74 → 189
    DUF3748; Protein of unknown function (DUF3748)
    NF033523
    Location:272 → 354
    lasso_peptidase; Atxe2 family lasso peptide isopeptidase
Nucleotide Protein
Heading Accession and Version

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