U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yihM putative TIM barrel domain-containing protein YihM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948367, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
yihM
Official Full Name
putative TIM barrel domain-containing protein YihM
Primary source
ECOCYC:EG11839
Locus tag
b3873
See related
ASAP:ABE-0012653
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3866
Summary
Expression of yihM is upregulated by hexane and is increased in an organic solvent-tolerant strain. [More information is available at EcoCyc: EG11839].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (4061165..4062145)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit assembly factor BipA Neighboring gene putative DNA-binding transcriptional regulator YihL Neighboring gene putative transporter YihN Neighboring gene putative outer membrane porin L

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays. Hayashi S, et al. J Biosci Bioeng, 2003. PMID 16233423
  2. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
putative TIM barrel domain-containing protein YihM

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4061165..4062145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418309.1 putative TIM barrel domain-containing protein YihM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418309.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N0IK54
    Conserved Domains (1) summary
    cl23721
    Location:41 → 238
    AP2Ec; AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.