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yihR putative sulfoquinovose mutarotase YihR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948375, updated on 3-Dec-2024

Summary

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Official Symbol
yihR
Official Full Name
putative sulfoquinovose mutarotase YihR
Primary source
ECOCYC:EG11844
Locus tag
b3879
See related
ASAP:ABE-0012669
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3872; squR
Summary
galM, yphB and yihR are paralogs. [More information is available at EcoGene: EG11844]. YihR appears to be involved in biofilm formation. [More information is available at EcoCyc: EG11844].
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Genomic context

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Sequence:
NC_000913.3 (4069475..4070401, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 2,3-dihydroxypropane-1-sulfonate export protein Neighboring gene sulfoquinovosidase Neighboring gene sulfoquinovose isomerase Neighboring gene 6-deoxy-6-sulfofructose-1-phosphate aldolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase. Itoh T, et al. J Mol Biol, 2008 Apr 11. PMID 18328504
  2. Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle. Denger K, et al. Nature, 2014 Mar 6. PMID 24463506
  3. Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence. Gibson DL, et al. J Bacteriol, 2006 Nov. PMID 17079680, Free PMC Article
  4. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables aldose 1-epimerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within 6-sulfoquinovose(1-) catabolic process IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in galactose catabolic process via UDP-galactose IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glucose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
putative sulfoquinovose mutarotase YihR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4069475..4070401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418315.3 putative sulfoquinovose mutarotase YihR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418315.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X7EWU6, A0AAE9PYM6
    Conserved Domains (1) summary
    PRK15172
    Location:9 → 308
    PRK15172; aldose-1-epimerase
Nucleotide Protein
Heading Accession and Version

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