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rhaD rhamnulose-1-phosphate aldolase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948401, updated on 3-Dec-2024

Summary

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Official Symbol
rhaD
Official Full Name
rhamnulose-1-phosphate aldolase
Primary source
ECOCYC:EG11866
Locus tag
b3902
See related
ASAP:ABE-0012731
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3895
Summary
Rhamnulose-1-phosphate aldolase is a class II aldolase that catalyzes the third step in the L-rhamnose degradation pathway. [More information is available at EcoCyc: EG11866].
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Genomic context

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Sequence:
NC_000913.3 (4093448..4094272, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative PTS enzyme IIA component FrvA Neighboring gene L-rhamnose mutarotase Neighboring gene L-rhamnose isomerase Neighboring gene rhamnulokinase Neighboring gene DNA-binding transcriptional activator RhaS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quo vadis photorespiration: a tale of two aldolases. Hixon M, et al. FEBS Lett, 1996 Sep 2. PMID 8774862
  2. L-Rhamnulose-1-phosphate aldosase. Chiu TH, et al. Methods Enzymol, 1975. PMID 237196
  3. L-Rhamnulose 1-phosphate aldolase of Escherichia coli. The role of metal in enzyme structure. Schwartz NB, et al. Biochemistry, 1974 Apr 9. PMID 4208690
  4. L-rhamnulose 1-phosphate aldolase from Escherichia coli. Crystallization and properties. Chiu TH, et al. Biochemistry, 1969 Jan. PMID 4975916
  5. Designed protein-protein association. Grueninger D, et al. Science, 2008 Jan 11. PMID 18187656

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables aldehyde-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carbon-carbon lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables rhamnulose-1-phosphate aldolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables rhamnulose-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in monosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in pentose catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rhamnose catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rhamnose catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rhamnose metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
rhamnulose-1-phosphate aldolase
NP_418338.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4093448..4094272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418338.1 rhamnulose-1-phosphate aldolase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418338.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1MNY2
    Conserved Domains (1) summary
    PRK03634
    Location:1 → 274
    PRK03634; rhamnulose-1-phosphate aldolase; Provisional
Nucleotide Protein
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