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yiiX putative lipid-binding hydrolase YiiX [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948436, updated on 3-Dec-2024

Summary

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Official Symbol
yiiX
Official Full Name
putative lipid-binding hydrolase YiiX
Primary source
ECOCYC:EG11882
Locus tag
b3937
See related
ASAP:ABE-0012869
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3929
Summary
YebB and YiiX are paralogs. [More information is available at EcoGene: EG11882]. YiiX is a member of a protein superfamily that includes the NlpC/P60 peptidases that exhibit activity toward peptidoglycan (cell wall) . [More information is available at EcoCyc: EG11882].
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Genomic context

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Sequence:
NC_000913.3 (4127286..4127894, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene primosomal protein N' Neighboring gene 50S ribosomal subunit protein L31 Neighboring gene DNA-binding transcriptional repressor MetJ Neighboring gene O-succinylhomoserine(thiol)-lyase/O-succinylhomoserine lyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
  2. Reshuffling of Rhs components to create a new element. Zhao S, et al. J Bacteriol, 1995 Mar. PMID 7868617, Free PMC Article
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative lipid-binding hydrolase YiiX

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4127286..4127894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418372.1 putative lipid-binding hydrolase YiiX [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418372.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T6PTB9
    Conserved Domains (1) summary
    PRK10030
    Location:1 → 197
    PRK10030; YiiX family permuted papain-like enzyme
Nucleotide Protein
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