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rdgC nucleoid-associated protein RdgC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948585, updated on 17-Dec-2024

Summary

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Official Symbol
rdgC
Official Full Name
nucleoid-associated protein RdgC
Primary source
ECOCYC:EG12158
Locus tag
b0393
See related
ASAP:ABE-0001366
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0388; yaiD
Summary
Growth in recBC sbcBC rdgC strains is dependent on recombination proteins. [More information is available at EcoGene: EG12158]. RdgC is a component of the nucleoid . [More information is available at EcoCyc: EG12158].
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Genomic context

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Sequence:
NC_000913.3 (409108..410019, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene nucleoside phosphorylase PpnP Neighboring gene pseudo Neighboring gene protein YkiD Neighboring gene fructokinase Neighboring gene putative transport protein AraJ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RdgC protein employs a novel mechanism involving a finger domain to bind to circular DNA. Briggs GS, et al. Nucleic Acids Res, 2010 Oct. PMID 20525790, Free PMC Article
  2. Ring structure of the Escherichia coli DNA-binding protein RdgC associated with recombination and replication fork repair. Briggs GS, et al. J Biol Chem, 2007 Apr 27. PMID 17308310
  3. AFM studies on the role of the protein RdgC in bacterial DNA recombination. Tessmer I, et al. J Mol Biol, 2005 Jul 8. PMID 15923011
  4. The RdgC protein of Escherichia coli binds DNA and counters a toxic effect of RecFOR in strains lacking the replication restart protein PriA. Moore T, et al. EMBO J, 2003 Feb 3. PMID 12554673, Free PMC Article
  5. Palindromes as substrates for multiple pathways of recombination in Escherichia coli. Cromie GA, et al. Genetics, 2000 Feb. PMID 10655207, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A model is proposed to explain how RdgC loads onto DNA.
    Title: The RdgC protein employs a novel mechanism involving a finger domain to bind to circular DNA.
  2. N-terminus verified by Edman degradation on complete protein
    Title: Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli.
  3. imaging of complexes of RdgC with both linear and supercoiled circular plasmid DNA using atomic force microscopy
    Title: AFM studies on the role of the protein RdgC in bacterial DNA recombination.
  4. RdgC inhibits RecA in Escherichia coli
    Title: Inhibition of RecA protein function by the RdgC protein from Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of DNA recombination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in bacterial nucleoid IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in bacterial nucleoid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoid IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nucleoid-associated protein RdgC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    409108..410019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414927.1 nucleoid-associated protein RdgC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414927.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TPT4, A0A6C9QEQ1
    Conserved Domains (1) summary
    COG2974
    Location:2 → 303
    RdgC; DNA recombination-dependent growth factor C [Replication, recombination and repair]
Nucleotide Protein
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