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phnF putative transcriptional regulator PhnF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948617, updated on 3-Dec-2024

Summary

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Official Symbol
phnF
Official Full Name
putative transcriptional regulator PhnF
Primary source
ECOCYC:EG10715
Locus tag
b4102
See related
ASAP:ABE-0013435
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4095
Summary
GntR family. [More information is available at EcoGene: EG10715]. PhnF is a transcriptional regulator that belongs to the GntR family (specifically, to the HutC subfamily) . [More information is available at EcoCyc: EG10715].
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Genomic context

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Sequence:
NC_000913.3 (4321697..4322422, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene carbon-phosphorus lyase core complex subunit PhnJ Neighboring gene carbon-phosphorus lyase core complex subunit PhnI Neighboring gene carbon-phosphorus lyase core complex subunit PhnH Neighboring gene carbon-phosphorus lyase core complex subunit PhnG Neighboring gene pseudo Neighboring gene phosphonate/phosphate ABC transporter periplasmic binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi. Metcalf WW, et al. J Bacteriol, 1991 Jan. PMID 1846145, Free PMC Article
  2. Molecular genetic studies of a 10.9-kb operon in Escherichia coli for phosphonate uptake and biodegradation. Wanner BL, et al. FEMS Microbiol Lett, 1992 Dec 15. PMID 1335942
  3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  4. HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold. Aravind L, et al. FEMS Microbiol Lett, 2003 May 16. PMID 12757941
  5. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12. Makino K, et al. J Bacteriol, 1991 Apr. PMID 1840580, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in organic phosphonate transport IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transcriptional regulator PhnF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4321697..4322422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418526.1 putative transcriptional regulator PhnF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418526.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7A6T8N3, A0A8I0CFK1, A0AAP3A1T8
    Conserved Domains (1) summary
    PRK10079
    Location:1 → 241
    PRK10079; phosphonate metabolism transcriptional regulator PhnF; Provisional
Nucleotide Protein
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