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yjdM zinc ribbon domain-containing protein YjdM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948621, updated on 17-Dec-2024

Summary

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Official Symbol
yjdM
Official Full Name
zinc ribbon domain-containing protein YjdM
Primary source
ECOCYC:EG10711
Locus tag
b4108
See related
ASAP:ABE-0013451
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4101; phnA
Summary
AFMB Structural Genomics target Number 17 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG10711]. The phn genes of Escherichia coli B have been cloned . [More information is available at EcoCyc: EG10711].
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Genomic context

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Sequence:
NC_000913.3 (4326399..4326734, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphonate/phosphate ABC transporter ATP binding subunit Neighboring gene PF06983 family protein YjdN Neighboring gene regulator of diguanylate cyclase RdcA Neighboring gene regulator of diguanylate cyclase RdcB Neighboring gene osmolyte:H(+) symporter ProP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  2. Evidence for a fourteen-gene, phnC to phnP locus for phosphonate metabolism in Escherichia coli. Metcalf WW, et al. Gene, 1993 Jul 15. PMID 8335257
  3. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12. Makino K, et al. J Bacteriol, 1991 Apr. PMID 1840580, Free PMC Article
  4. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
  5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
zinc ribbon domain-containing protein YjdM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4326399..4326734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418532.1 zinc ribbon domain-containing protein YjdM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418532.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0G384
    Conserved Domains (1) summary
    PRK10220
    Location:1 → 111
    PRK10220; phnA family protein
Nucleotide Protein
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