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yjdF DUF2238 domain-containing inner membrane protein YjdF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948634, updated on 3-Dec-2024

Summary

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Official Symbol
yjdF
Official Full Name
DUF2238 domain-containing inner membrane protein YjdF
Primary source
ECOCYC:G7825
Locus tag
b4121
See related
ASAP:ABE-0013498
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4114
Summary
YjdF is an inner membrane protein with six predicted transmembrane domains. [More information is available at EcoCyc: G7825].
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Genomic context

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Sequence:
NC_000913.3 (4344929..4345558, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase Neighboring gene melibiose:H(+)/Na(+)/Li(+) symporter Neighboring gene fumarase B Neighboring gene anaerobic C4-dicarboxylate transporter DcuB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12. Bell PJ, et al. J Bacteriol, 1989 Jun. PMID 2656658, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
  4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
  5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF2238 domain-containing inner membrane protein YjdF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4344929..4345558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418545.1 DUF2238 domain-containing inner membrane protein YjdF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418545.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A797I2A0, A0A8T5ZC38
    Conserved Domains (1) summary
    PRK09867
    Location:1 → 209
    PRK09867; hypothetical protein; Provisional
Nucleotide Protein
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