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epmB lysine 2,3-aminomutase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948662, updated on 3-Dec-2024

Summary

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Official Symbol
epmB
Official Full Name
lysine 2,3-aminomutase
Primary source
ECOCYC:G7836
Locus tag
b4146
See related
ASAP:ABE-0013580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4140; yjeK
Summary
YjeK is a homolog of Clostridium subterminale KamA lysine 2,3-aminomutase activity, but its specific activity is only 0.1% of that of KamA, which may indicate the physiological substrate for YjeK is still unknown (Behshad, 2006). [More information is available at EcoGene: EG12473]. The yjeK gene product is similar to the lysine 2,3-aminomutase of Clostridium subterminale. [More information is available at EcoCyc: G7836].
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Genomic context

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Sequence:
NC_000913.3 (4374629..4375657, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF4156 domain-containing lipoprotein YjeI Neighboring gene protein YjeJ Neighboring gene protein chain elongation factor EF-P Neighboring gene entericidin A lipoprotein, antidote to entericidin B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enantiomeric free radicals and enzymatic control of stereochemistry in a radical mechanism: the case of lysine 2,3-aminomutases. Behshad E, et al. Biochemistry, 2006 Oct 24. PMID 17042480, Free PMC Article
  2. Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial species. Bailly M, et al. Biol Direct, 2010 Jan 13. PMID 20070887, Free PMC Article
  3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 4 iron, 4 sulfur cluster binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables intramolecular aminotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables intramolecular aminotransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within post-translational protein modification RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
lysine 2,3-aminomutase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4374629..4375657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418570.1 lysine 2,3-aminomutase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418570.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376MEZ0
    Conserved Domains (1) summary
    TIGR03821
    Location:15 → 335
    EFP_modif_epmB; EF-P beta-lysylation protein EpmB
Nucleotide Protein
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