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yfdY DUF2545 domain-containing protein YfdY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948842, updated on 3-Dec-2024

Summary

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Official Symbol
yfdY
Official Full Name
DUF2545 domain-containing protein YfdY
Primary source
ECOCYC:G7240
Locus tag
b2377
See related
ASAP:ABE-0007841
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2373
Summary
Induced during biofilm formation. [More information is available at EcoGene: EG14147]. Regulation has been described . [More information is available at EcoCyc: G7240].
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Genomic context

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Sequence:
NC_000913.3 (2495050..2495292, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YfdX Neighboring gene colanic acid synthesis putative lipoprotein YpdI Neighboring gene palmitoleoyl acyltransferase Neighboring gene putative membrane protein YpdK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ypdI gene codes for a putative lipoprotein involved in the synthesis of colanic acid in Escherichia coli. Potrykus J, et al. FEMS Microbiol Lett, 2004 Jun 15. PMID 15183873
  2. Gene expression in Escherichia coli biofilms. Ren D, et al. Appl Microbiol Biotechnol, 2004 May. PMID 14727089
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF2545 domain-containing protein YfdY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2495050..2495292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416878.1 DUF2545 domain-containing protein YfdY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416878.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3K0ZRP9
    Conserved Domains (1) summary
    pfam10810
    Location:1 → 80
    DUF2545; Protein of unknown function (DUF2545)
Nucleotide Protein
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