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yicR RadC-like JAB domain-containing protein YicR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948968, updated on 3-Dec-2024

Summary

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Official Symbol
yicR
Official Full Name
RadC-like JAB domain-containing protein YicR
Primary source
ECOCYC:EG11312
Locus tag
b3638
See related
ASAP:ABE-0011889
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3628; radC
Summary
yicR is paralogous to cryptic prophage genes yfjY, ykfG, yeeS, although they lack the N-terminal helix-hairpin-helix (HhH) domain of YicR. [More information is available at EcoGene: EG11312]. The radC102 mutation was originally thought to be allelic with yicR/b3638; however, it is shown to be allelic with recG/b3652 . yicR supplied on a low-copy-number vector did not alter UV sensitivities of recG mutants or their background strain . [More information is available at EcoCyc: EG11312].
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Genomic context

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Sequence:
NC_000913.3 (3811891..3812559, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit protein L33 Neighboring gene 50S ribosomal subunit protein L28 Neighboring gene fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase Neighboring gene dUTP diphosphatase Neighboring gene nucleoid occlusion factor SlmA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. Starmer J, et al. PLoS Comput Biol, 2006 May. PMID 16710451, Free PMC Article
  2. Cloning of the Escherichia coli radC gene: identification of the RadC protein. Felzenszwalb I, et al. Braz J Med Biol Res, 1993 Dec. PMID 8136727
  3. Characterizations of highly expressed genes of four fast-growing bacteria. Karlin S, et al. J Bacteriol, 2001 Sep. PMID 11489855, Free PMC Article
  4. DNA microarray analysis of the expression profile of Escherichia coli in response to treatment with 4,5-dihydroxy-2-cyclopenten-1-one. Phadtare S, et al. J Bacteriol, 2002 Dec. PMID 12426362, Free PMC Article
  5. Escherichia coli radC is deficient in the recA-dependent repair of X-ray-induced DNA strand breaks. Felzenszwalb I, et al. Radiat Res, 1986 May. PMID 3517933

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RadC-like JAB domain-containing protein YicR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3811891..3812559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418095.4 RadC-like JAB domain-containing protein YicR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418095.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AP49
    Conserved Domains (1) summary
    TIGR00608
    Location:9 → 222
    radc; DNA repair protein radc
Nucleotide Protein
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