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ykfA putative GTP-binding protein YkfA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949004, updated on 3-Dec-2024

Summary

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Official Symbol
ykfA
Official Full Name
putative GTP-binding protein YkfA
Primary source
ECOCYC:G6128
Locus tag
b0253
See related
ASAP:ABE-0000858
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0255
Summary
Paralogous to yeeP and yfjP. [More information is available at EcoGene: EG13339].
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Genomic context

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Sequence:
NC_000913.3 (268097..268960, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DUF932 domain-containing protein YafZ Neighboring gene putative transcriptional regulator PerR Neighboring gene pseudo Neighboring gene IS30 family transposase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Twiss E, et al. Mol Microbiol, 2005 Sep. PMID 16135227
  2. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
  3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA wobble uridine modification IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative GTP-binding protein YkfA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    268097..268960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414787.4 putative GTP-binding protein YkfA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414787.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5ZPX8
    Conserved Domains (1) summary
    COG3596
    Location:1 → 287
    YeeP; Predicted GTPase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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