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xdhD fused putative xanthine/hypoxanthine oxidase: molybdopterin-binding subunit and Fe-S binding subunit [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949079, updated on 3-Dec-2024

Summary

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Official Symbol
xdhD
Official Full Name
fused putative xanthine/hypoxanthine oxidase: molybdopterin-binding subunit and Fe-S binding subunit
Primary source
ECOCYC:G7500
Locus tag
b2881
See related
ASAP:ABE-0009459
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2877; ygfN
Summary
XdhD is a xanthine dehydrogenase homolog but probably has no xanthine dehydrogenase activity. [More information is available at EcoGene: EG13064]. A ygfK mutant exhibits a defect in selenate reduction, and it is proposed that YgfK (potential oxidoreductase), YgfM (protein with a FAD domain), and YgfN (molybdopterin protein) are components of a selenate reductase . [More information is available at EcoCyc: G7500].
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Genomic context

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Sequence:
NC_000913.3 (3021316..3024186)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative oxidoreductase, Fe-S subunit Neighboring gene putative aminohydrolase SsnA Neighboring gene putative oxidoreductase Neighboring gene xanthine:H(+) symporter XanQ Neighboring gene guanine deaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring the microbial metalloproteome using MIRAGE. Sevcenco AM, et al. Metallomics, 2011 Dec. PMID 22094925
  2. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
  3. Molybdenum cofactor-dependent resistance to N-hydroxylated base analogs in Escherichia coli is independent of MobA function. Kozmin SG, et al. Mutat Res, 2007 Jun 1. PMID 17349664, Free PMC Article
  4. Involvement of a putative molybdenum enzyme in the reduction of selenate by Escherichia coli. Bébien M, et al. Microbiology (Reading), 2002 Dec. PMID 12480890
  5. Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage. Xi H, et al. J Bacteriol, 2000 Oct. PMID 10986234, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in purine nucleobase metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in purine ribonucleoside salvage IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fused putative xanthine/hypoxanthine oxidase: molybdopterin-binding subunit and Fe-S binding subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3021316..3024186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417357.1 fused putative xanthine/hypoxanthine oxidase: molybdopterin-binding subunit and Fe-S binding subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417357.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9X4C8, A0A8T5YBJ2
    Conserved Domains (1) summary
    TIGR03313
    Location:5 → 955
    Se_sel_red_Mo; probable selenate reductase, molybdenum-binding subunit
Nucleotide Protein
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