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yjiR fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949089, updated on 3-Dec-2024

Summary

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Official Symbol
yjiR
Official Full Name
fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR
Primary source
ECOCYC:G7936
Locus tag
b4340
See related
ASAP:ABE-0014232
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4331
Summary
AFMB Structural Genomics target Number 74 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12579].
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Genomic context

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Sequence:
NC_000913.3 (4570162..4571574, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YtiE Neighboring gene pseudo Neighboring gene DUF1127 domain-containing protein YjiS Neighboring gene putative uncharacterized protein YjiT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  3. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. Rigali S, et al. J Biol Chem, 2002 Apr 12. PMID 11756427

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in alpha-amino acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4570162..4571574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418760.1 fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418760.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T6BEX4
    Conserved Domains (1) summary
    COG1167
    Location:1 → 470
    ARO8; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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