U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

gfcB lipoprotein GfcB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949118, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
gfcB
Official Full Name
lipoprotein GfcB
Primary source
ECOCYC:G6507
Locus tag
b0986
See related
ASAP:ABE-0003323
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0977; ymcC
Summary
Function characterized in enteropathogenic Escherichia coli (EPEC). [More information is available at EcoGene: EG13731]. Sequence similarity suggests that YmcC may be a lipoprotein and/or an outer membrane porin . [More information is available at EcoCyc: G6507].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1048688..1049332, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphotyrosine-protein phosphatase Etp Neighboring gene putative exopolysaccharide export lipoprotein GfcE Neighboring gene putative lipoprotein GfcD Neighboring gene capsule biosynthesis GfcC family protein Neighboring gene threonine-rich inner membrane protein GfcA Neighboring gene IS1 family protein InsA Neighboring gene IS1 family protein InsB

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655. Brokx SJ, et al. J Bacteriol, 2004 May. PMID 15126489, Free PMC Article
  2. Biosynthesis and assembly of capsular polysaccharides in Escherichia coli. Whitfield C. Annu Rev Biochem, 2006. PMID 16756484
  3. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
lipoprotein GfcB

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1048688..1049332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415506.1 lipoprotein GfcB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415506.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8H9XNH6
    Conserved Domains (1) summary
    pfam11102
    Location:24 → 210
    YjbF; Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.