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yaaY DUF2575 domain-containing protein YaaY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 949128, updated on 3-Dec-2024

Summary

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Official Symbol
yaaY
Official Full Name
DUF2575 domain-containing protein YaaY
Primary source
ECOCYC:G6087
Locus tag
b0024
See related
ASAP:ABE-0000089
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0025
Summary
YaaY has an N-terminal lipobox LAGC, but does not have the other features characteristic of a signal peptide and is probably not a lipoprotein. [More information is available at EcoGene: EG14386].
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Genomic context

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Sequence:
NC_000913.3 (21181..21399)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene IS1 family protein InsB Neighboring gene IS1 family protein InsA Neighboring gene 30S ribosomal subunit protein S20 Neighboring gene bifunctional riboflavin kinase/FMN adenylyltransferase Neighboring gene isoleucine--tRNA ligase Neighboring gene lipoprotein signal peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships. Skunca N, et al. PLoS Comput Biol, 2013. PMID 23308060, Free PMC Article
  2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DUF2575 domain-containing protein YaaY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    21181..21399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414565.1 DUF2575 domain-containing protein YaaY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414565.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1V2GHF2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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