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LOC9654802 probable polygalacturonase [ Selaginella moellendorffii ]

Gene ID: 9654802, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9654802
Gene description
probable polygalacturonase
Locus tag
SELMODRAFT_155743
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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See LOC9654802 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314318.1 (987680..989277)

NW_003314318.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112351112 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene protein RecA-like Neighboring gene RNA pseudouridine synthase 1 Neighboring gene folylpolyglutamate synthase Neighboring gene ABC transporter B family member 23, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314318 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314318.1 Reference v1.0

    Range
    987680..989277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002983219.2 → XP_002983265.1  probable polygalacturonase

    See identical proteins and their annotated locations for XP_002983265.1

    UniProtKB/TrEMBL
    D8QNX5, D8SJ44
    Conserved Domains (2) summary
    COG5434
    Location:1 → 436
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
    cl19188
    Location:35 → 245
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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