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B3gnt9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [ Mus musculus (house mouse) ]

Gene ID: 97440, updated on 4-Jan-2025

Summary

Official Symbol
B3gnt9provided by MGI
Official Full Name
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9provided by MGI
Primary source
MGI:MGI:2142841
See related
Ensembl:ENSMUSG00000069920 AllianceGenome:MGI:2142841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BGnT-9; beta-1; 3-Gn-T9; B3gnt9-ps; beta3Gn-T9
Summary
Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process and protein O-linked glycosylation. Predicted to be active in Golgi membrane. Orthologous to human B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Ubiquitous expression in lung adult (RPKM 19.6), ovary adult (RPKM 18.3) and 28 other tissues See more
Orthologs
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Genomic context

See B3gnt9 in Genome Data Viewer
Location:
8 D3; 8 53.04 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (105979270..105981895, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (105252638..105255250, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22063 Neighboring gene core binding factor beta Neighboring gene expressed sequence AI225912 Neighboring gene STARR-seq mESC enhancer starr_22523 Neighboring gene STARR-seq mESC enhancer starr_22525 Neighboring gene STARR-seq mESC enhancer starr_22526 Neighboring gene phagosome assembly factor 1 Neighboring gene STARR-positive B cell enhancer mm9_chr8:107778026-107778327 Neighboring gene STARR-positive B cell enhancer ABC_E8260 Neighboring gene TNFRSF1A-associated via death domain Neighboring gene F-box and leucine-rich repeat protein 8

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC117964

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in poly-N-acetyllactosamine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein O-linked glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Names
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene
beta-1,3-Gn-T9
beta-1,3-N-acetylglucosaminyltransferase 9
beta-1,3-galactosyltransferase-related protein
NP_001258844.1
NP_849210.1
XP_006531604.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271915.1NP_001258844.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9

    See identical proteins and their annotated locations for NP_001258844.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate internal segment, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK032108, AK169360, CB590403
    Consensus CDS
    CCDS40455.1
    UniProtKB/Swiss-Prot
    Q8BK98, Q8VI16
    Related
    ENSMUSP00000130840.2, ENSMUST00000136822.3
    Conserved Domains (1) summary
    cl21608
    Location:132331
    Galactosyl_T; Galactosyltransferase
  2. NM_178879.4NP_849210.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9

    See identical proteins and their annotated locations for NP_849210.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an alternate internal segment in the 5' UTR, compared to variant 2. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK032108, AK169360, BY231124, CB590403
    Consensus CDS
    CCDS40455.1
    UniProtKB/Swiss-Prot
    Q8BK98, Q8VI16
    Related
    ENSMUSP00000133023.2, ENSMUST00000093217.9
    Conserved Domains (1) summary
    cl21608
    Location:132331
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    105979270..105981895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531541.5XP_006531604.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 isoform X1

    See identical proteins and their annotated locations for XP_006531604.1

    UniProtKB/Swiss-Prot
    Q8BK98, Q8VI16
    Conserved Domains (1) summary
    cl21608
    Location:132331
    Galactosyl_T; Galactosyltransferase