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Qser1 glutamine and serine rich 1 [ Mus musculus (house mouse) ]

Gene ID: 99003, updated on 27-Nov-2024

Summary

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Official Symbol
Qser1provided by MGI
Official Full Name
glutamine and serine rich 1provided by MGI
Primary source
MGI:MGI:2138986
See related
Ensembl:ENSMUSG00000074994 AllianceGenome:MGI:2138986
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4732486I23Rik
Summary
Predicted to be located in chromosome. Orthologous to human QSER1 (glutamine and serine rich 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in limb E14.5 (RPKM 6.7), whole brain E14.5 (RPKM 6.5) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Qser1 in Genome Data Viewer
Location:
2 E2; 2 54.93 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (104585140..104649028, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104754793..104818680, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1 Neighboring gene DEP domain containing 7 Neighboring gene STARR-seq mESC enhancer starr_05294 Neighboring gene RIKEN cDNA 2310047K21 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:104657358-104657511 Neighboring gene predicted gene, 39898 Neighboring gene TAR DNA binding protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Role of TIF1alpha as a modulator of embryonic transcription in the mouse zygote. Torres-Padilla ME, et al. J Cell Biol, 2006 Jul 31. PMID 16880268, Free PMC Article
  2. NANOG-dependent function of TET1 and TET2 in establishment of pluripotency. Costa Y, et al. Nature, 2013 Mar 21. PMID 23395962, Free PMC Article
  3. A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal. Gagliardi A, et al. EMBO J, 2013 Aug 14. PMID 23892456, Free PMC Article
  4. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  5. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • RP24-297H17.9

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glutamine and serine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123327.3 → NP_001116799.2  glutamine and serine-rich protein 1

    Status: VALIDATED

    Source sequence(s)
    BX908741
    Consensus CDS
    CCDS50653.1
    UniProtKB/Swiss-Prot
    A0A338P6K9, A2BIE1, Q3UR75
    Related
    ENSMUSP00000155882.2, ENSMUST00000231375.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    104585140..104649028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162743.1 → XP_036018636.1  glutamine and serine-rich protein 1 isoform X1

    Conserved Domains (3) summary
    PHA02939
    Location:1433 → 1493
    PHA02939; hypothetical protein; Provisional
    pfam13926
    Location:1579 → 1699
    DUF4211; Domain of unknown function (DUF4211)
    NF033849
    Location:384 → 728
    ser_rich_anae_1; serine-rich protein

  2. XM_006500459.4 → XP_006500522.1  glutamine and serine-rich protein 1 isoform X2

    Conserved Domains (3) summary
    PHA02939
    Location:1433 → 1493
    PHA02939; hypothetical protein; Provisional
    TIGR01000
    Location:377 → 650
    bacteriocin_acc; bacteriocin secretion accessory protein
    pfam13926
    Location:1579 → 1653
    DUF4211; Domain of unknown function (DUF4211)

  3. XM_006500460.5 → XP_006500523.1  glutamine and serine-rich protein 1 isoform X3

    Conserved Domains (2) summary
    PHA02939
    Location:1433 → 1493
    PHA02939; hypothetical protein; Provisional
    TIGR01000
    Location:377 → 650
    bacteriocin_acc; bacteriocin secretion accessory protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A338P6K9.1 GenPept UniProtKB/Swiss-Prot:A0A338P6K9

Gene LinkOut

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