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    D030018L15Rik RIKEN cDNA D030018L15 gene [ Mus musculus (house mouse) ]

    Gene ID: 402773, updated on 17-Aug-2024

    Summary

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    Official Symbol
    D030018L15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D030018L15 geneprovided by MGI
    Primary source
    MGI:MGI:3028082
    See related
    Ensembl:ENSMUSG00000078925 AllianceGenome:MGI:3028082
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See D030018L15Rik in Genome Data Viewer
    Location:
    15 F1; 15 51.44 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (95949497..95977434, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (96051616..96079553, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_39574 Neighboring gene STARR-seq mESC enhancer starr_39575 Neighboring gene anoctamin 6 Neighboring gene predicted gene, 17546 Neighboring gene predicted gene, 53908 Neighboring gene STARR-positive B cell enhancer mm9_chr15:95792991-95793292 Neighboring gene STARR-positive B cell enhancer ABC_E7409 Neighboring gene STARR-seq mESC enhancer starr_39579 Neighboring gene nuclear receptor coactivator 2 pseudogene Neighboring gene predicted gene, 38469 Neighboring gene RIKEN cDNA 2610037D02 gene Neighboring gene eukaryotic translation initiation factor 3, subunit I pseudogene Neighboring gene predicted gene, 53909

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • nuclear receptor coactivator 2 pseudogene

    Clone Names

    • AC109202.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126492.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK137238
      Related
      ENSMUST00000140253.2

    2. NR_126493.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses two alternate splice sites and contains an alternate exon in the 3' region, which results in a shorter transcript compared to variant 1.
      Source sequence(s)
      AK135992, AK137238
      Related
      ENSMUST00000139808.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      95949497..95977434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033483.1: Suppressed sequence

      Description
      NM_001033483.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NR_003627.1: Suppressed sequence

      Description
      NR_003627.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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