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    LOC345571 RUN and FYVE domain containing 3 pseudogene [ Homo sapiens (human) ]

    Gene ID: 345571, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC345571
    Gene description
    RUN and FYVE domain containing 3 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LOC345571 in Genome Data Viewer
    Location:
    5q21.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (106416099..106417453, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (106920619..106921971, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (105751800..105753154, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene NANOG hESC enhancer GRCh37_chr5:105275636-105276417 Neighboring gene RNA, 5S ribosomal pseudogene 189 Neighboring gene MPRA-validated peak5393 silencer Neighboring gene MPRA-validated peak5394 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:105590357-105590959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:105758794-105759294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766194-105766694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766695-105767195 Neighboring gene zinc finger protein 736 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105920305-105920824 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106090731-106091273 Neighboring gene long intergenic non-protein coding RNA 1950 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:106314019-106314772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:106319287-106320038

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021859.2 

      Range
      1..1355
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      106416099..106417453 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      106920619..106921971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)