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    SVIL2P supervillin family member 2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 645954, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SVIL2Pprovided by HGNC
    Official Full Name
    supervillin family member 2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:44959
    See related
    AllianceGenome:HGNC:44959
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SVILP1
    Expression
    Broad expression in endometrium (RPKM 1.2), gall bladder (RPKM 0.9) and 22 other tissues See more
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    Genomic context

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    See SVIL2P in Genome Data Viewer
    Location:
    10p11.23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (30692274..30717013)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (30723242..30748280)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (30981203..31005942)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376479 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:30885919-30886534 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:30886535-30887149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30894172-30894987 Neighboring gene uncharacterized LOC124902404 Neighboring gene lysozyme like 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30932862-30933433 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:30950154-30951353 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30970851-30972050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:30972911-30973410 Neighboring gene NANOG hESC enhancer GRCh37_chr10:30976431-30976969 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30984558-30985757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3223 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:30994171-30994694 Neighboring gene long intergenic non-protein coding RNA 2644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2269 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31072075-31072575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31106665-31107586 Neighboring gene uncharacterized LOC124902405

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • supervillin pseudogene 1

    Clone Names

    • FLJ59067, FLJ59642

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036438.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK302694, AL451107

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      30692274..30717013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      30723242..30748280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials