U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Gm6578 predicted gene 6578 [ Mus musculus (house mouse) ]

    Gene ID: 625347, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm6578provided by MGI
    Official Full Name
    predicted gene 6578provided by MGI
    Primary source
    MGI:MGI:3643037
    See related
    Ensembl:ENSMUSG00000121657 AllianceGenome:MGI:3643037
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG625347
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm6578 in Genome Data Viewer
    Location:
    6 A1; 6 5.18 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (12099517..12109579, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (12099518..12109580, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene EST AA545190 Neighboring gene STARR-seq mESC enhancer starr_15152 Neighboring gene STARR-seq mESC enhancer starr_15153 Neighboring gene STARR-seq mESC enhancer starr_15154 Neighboring gene STARR-seq mESC enhancer starr_15155 Neighboring gene STARR-seq mESC enhancer starr_15156 Neighboring gene STARR-seq mESC enhancer starr_15157 Neighboring gene STARR-seq mESC enhancer starr_15158 Neighboring gene STARR-seq mESC enhancer starr_15159 Neighboring gene STARR-seq mESC enhancer starr_15161 Neighboring gene STARR-seq mESC enhancer starr_15162 Neighboring gene STARR-seq mESC enhancer starr_15163 Neighboring gene STARR-seq mESC enhancer starr_15164 Neighboring gene STARR-seq mESC enhancer starr_15166 Neighboring gene Ndufa4, mitochondrial complex associated Neighboring gene PHD finger protein 14 Neighboring gene STARR-seq mESC enhancer starr_15168 Neighboring gene STARR-seq mESC enhancer starr_15169 Neighboring gene STARR-seq mESC enhancer starr_15170 Neighboring gene STARR-seq mESC enhancer starr_15172 Neighboring gene predicted gene, 32222 Neighboring gene predicted gene, 35961

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Accelerating functional gene discovery in osteoarthritis. Butterfield NC, et al. Nat Commun, 2021 Jan 20. PMID 33473114, Free PMC Article
    2. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Go to the top of the page Help

    Other Names

    • mitochondrial ribosomal protein L32 pseudogene

    Clone Names

    • MGC117608

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003631.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC099426
      Related
      ENSMUST00000080891.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      12099517..12109579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039041.1: Suppressed sequence

      Description
      NM_001039041.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.