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    LOC646870 centrosomal protein 57kDa pseudogene [ Homo sapiens (human) ]

    Gene ID: 646870, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC646870
    Gene description
    centrosomal protein 57kDa pseudogene
    See related
    Ensembl:ENSG00000231615
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC646870 in Genome Data Viewer
    Location:
    1q25.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (173362378..173363891, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (172720481..172721994, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (173331517..173333030, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TNF superfamily member 4 Neighboring gene uncharacterized LOC100506023 Neighboring gene uncharacterized LOC124904846 Neighboring gene MPRA-validated peak458 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2100 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2103 Neighboring gene ribosomal protein L26 pseudogene 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2104 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2105 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2107 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2110 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2111 Neighboring gene PRDX6 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 8886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2112 Neighboring gene Sharpr-MPRA regulatory region 679 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:173429231-173429730 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:173445479-173446015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2113 Neighboring gene uncharacterized LOC124904456 Neighboring gene peroxiredoxin 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029199.2 

      Range
      101..1614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      173362378..173363891 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      172720481..172721994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039790.1: Suppressed sequence

      Description
      NM_001039790.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

    2. NR_033756.1: Suppressed sequence

      Description
      NR_033756.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is not transcribed.
    Nucleotide Protein
    Heading Accession and Version

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