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    LOC107986539 uncharacterized LOC107986539 [ Homo sapiens (human) ]

    Gene ID: 107986539, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC107986539
    Gene description
    uncharacterized LOC107986539
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107986539 in Genome Data Viewer
    Location:
    6p12.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (55958184..55984112)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (55797775..55823706)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr6:55639263-55639806 Neighboring gene bone morphogenetic protein 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:55724930-55725119 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:55774580-55775114 Neighboring gene nucleophosmin 1 pseudogene 36 Neighboring gene uncharacterized LOC105375100 Neighboring gene Sharpr-MPRA regulatory region 6371 Neighboring gene collagen type XXI alpha 1 chain Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:56111277-56111778 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:56111779-56112278 Neighboring gene dihydrofolate reductase pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      55958184..55984112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001743880.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      55797775..55823706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077397.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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