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    LOC105376988 uncharacterized LOC105376988 [ Homo sapiens (human) ]

    Gene ID: 105376988, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105376988
    Gene description
    uncharacterized LOC105376988
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105376988 in Genome Data Viewer
    Location:
    3p24.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (21169078..21221564)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (21179506..21232005)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986068 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:21018406-21018977 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:21050999-21051706 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:21058595-21059794 Neighboring gene uncharacterized LOC105376987 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:21245759-21245949 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:21440269-21440769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21447352-21447855 Neighboring gene VENT homeobox pseudogene 7 Neighboring gene zinc finger protein 385D Neighboring gene NANOG hESC enhancer GRCh37_chr3:21558661-21559162 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      21169078..21221564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_940646.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      21179506..21232005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073373.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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