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    LINC02315 long intergenic non-protein coding RNA 2315 [ Homo sapiens (human) ]

    Gene ID: 644919, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02315provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2315provided by HGNC
    Primary source
    HGNC:HGNC:53234
    See related
    AllianceGenome:HGNC:53234
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02315 in Genome Data Viewer
    Location:
    14q21.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (40954711..41141048)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (35145507..35331880)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (41423916..41610251)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370466 Neighboring gene MPRA-validated peak2137 silencer Neighboring gene uncharacterized LOC105370467 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41328024-41328794 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:41423413-41423986 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:41423987-41424559 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:41613785-41614285 Neighboring gene WD repeat domain 75 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:41872411-41873214 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41873331-41873866 Neighboring gene NANOG hESC enhancer GRCh37_chr14:41974655-41975156 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:41984914-41985504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:42009653-42010250 Neighboring gene LRFN5 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project. Oudot-Mellakh T, et al. Br J Haematol, 2012 Apr. PMID 22443383
    2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109757.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL390815, BX248273, CN418512

    2. NR_109758.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contain an alternate 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      BX248273, CN274424

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      40954711..41141048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      35145507..35331880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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