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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001360465.1 → NP_001347394.1 zinc finger protein 235 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC138791, AK147833
- Conserved Domains (4) summary
-
- COG5048
Location:355 → 696
- COG5048; FOG: Zn-finger [General function prediction only]
- COG5189
Location:685 → 768
- SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
- sd00017
Location:411 → 431
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:8 → 48
- KRAB; KRAB box
-
NM_019941.3 → NP_064325.2 zinc finger protein 235 isoform 2
See identical proteins and their annotated locations for NP_064325.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AC138791
- Consensus CDS
-
CCDS39825.1
- UniProtKB/TrEMBL
-
Q499D5
- Conserved Domains (4) summary
-
- COG5048
Location:285 → 626
- COG5048; FOG: Zn-finger [General function prediction only]
- COG5189
Location:615 → 698
- SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
- sd00017
Location:341 → 361
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:8 → 48
- KRAB; KRAB box
RNA
-
NR_153441.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' end compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
AC138791, AK045726
-
NR_153442.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 3' end compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
AC138791, AK139127
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
23830452..23842669
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036153273.1 → XP_036009166.1 zinc finger protein 235 isoform X2
- UniProtKB/TrEMBL
-
Q499D5
- Related
- ENSMUSP00000050803.8, ENSMUST00000056549.9
- Conserved Domains (4) summary
-
- COG5048
Location:285 → 626
- COG5048; FOG: Zn-finger [General function prediction only]
- COG5189
Location:615 → 698
- SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
- sd00017
Location:341 → 361
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:8 → 48
- KRAB; KRAB box
-
XM_036153272.1 → XP_036009165.1 zinc finger protein 235 isoform X1
- Conserved Domains (4) summary
-
- COG5048
Location:316 → 657
- COG5048; FOG: Zn-finger [General function prediction only]
- COG5189
Location:646 → 729
- SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
- sd00017
Location:372 → 392
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam01352
Location:39 → 79
- KRAB; KRAB box