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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_016646.2 RefSeqGene
- Range
-
4814..184761
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001145472.3 → NP_001138944.1 lipoxygenase homology domain-containing protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is missing many exons from the 5' end, contains an additional in-frame coding exon, and differs at the 5' and 3' ends compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC018931, AK127869, BC041860, BG722402, BX647229
- Consensus CDS
-
CCDS45861.1
- UniProtKB/TrEMBL
-
J3KRE7
- Related
- ENSP00000300591.6, ENST00000300591.11
- Conserved Domains (2) summary
-
- cd01756
Location:64 → 184
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:1043 → 1102
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
NM_001145473.3 → NP_001138945.1 lipoxygenase homology domain-containing protein 1 isoform 3
See identical proteins and their annotated locations for NP_001138945.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is missing many exons from the 5' end, and contains an alternate 5' terminal exon compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and a shorter isoform (3) compared to isoform 1.
- Source sequence(s)
-
AK302484, BC041860, BC047720
- Consensus CDS
-
CCDS45862.1
- UniProtKB/Swiss-Prot
-
Q8IVV2
- UniProtKB/TrEMBL
-
B7Z7T7
- Related
- ENSP00000381676.4, ENST00000398686.8
- Conserved Domains (2) summary
-
- cd01756
Location:393 → 511
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:257 → 358
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
NM_001173129.2 → NP_001166600.1 lipoxygenase homology domain-containing protein 1 isoform 4
See identical proteins and their annotated locations for NP_001166600.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) is missing many exons from the 5' end, and differs at the 5' and 3' ends compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and a shorter isoform (4) compared to isoform 1.
- Source sequence(s)
-
AC018931, BC047720, BX647229
- Consensus CDS
-
CCDS54184.1
- UniProtKB/Swiss-Prot
-
Q8IVV2
- Related
- ENSP00000381692.2, ENST00000398705.7
- Conserved Domains (2) summary
-
- cd01756
Location:124 → 244
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:393 → 457
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
NM_001308013.2 → NP_001294942.1 lipoxygenase homology domain-containing protein 1 isoform 5
See identical proteins and their annotated locations for NP_001294942.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) is missing many exons from the 5' end, lacks an in-frame coding exon, and differs at the 5' and 3' ends compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and a shorter isoform (5) with a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC018931, BX647229
- Consensus CDS
-
CCDS77182.1
- UniProtKB/TrEMBL
- J3KRE7, J3QKX9
- Related
- ENSP00000463285.1, ENST00000579038.6
- Conserved Domains (2) summary
-
- cd01756
Location:253 → 373
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:3 → 88
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
NM_001384474.1 → NP_001371403.1 lipoxygenase homology domain-containing protein 1 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC018931, AC064800, AC091139
- Consensus CDS
-
CCDS92455.1
- UniProtKB/Swiss-Prot
- B7WNN3, B7WNT1, B7WPI9, H7BZ41, Q6ZRY7, Q86WW9, Q8IVV2, Q96DL7
- UniProtKB/TrEMBL
-
A0A2R8Y7K4
- Related
- ENSP00000496347.1, ENST00000642948.1
- Conserved Domains (2) summary
-
- cd01756
Location:1022 → 1142
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:816 → 896
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
NM_144612.7 → NP_653213.6 lipoxygenase homology domain-containing protein 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC018931, AC064800, AC091139, AK127869, AK302484, BC041860, BX647229, DR731345, DR731346
- Consensus CDS
-
CCDS11929.2
- UniProtKB/Swiss-Prot
- B7WNN3, B7WNT1, B7WPI9, H7BZ41, Q6ZRY7, Q86WW9, Q8IVV2, Q96DL7
- UniProtKB/TrEMBL
-
F5GZB4
- Related
- ENSP00000444586.1, ENST00000536736.5
- Conserved Domains (2) summary
-
- cd01756
Location:1022 → 1142
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:816 → 896
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000018.10 Reference GRCh38.p14 Primary Assembly
- Range
-
46476961..46657220 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047437289.1 → XP_047293245.1 lipoxygenase homology domain-containing protein 1 isoform X1
- UniProtKB/Swiss-Prot
- B7WNN3, B7WNT1, B7WPI9, H7BZ41, Q6ZRY7, Q86WW9, Q8IVV2, Q96DL7
-
XM_011525804.3 → XP_011524106.1 lipoxygenase homology domain-containing protein 1 isoform X5
- Conserved Domains (2) summary
-
- cd01756
Location:409 → 529
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:203 → 283
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_006722391.4 → XP_006722454.1 lipoxygenase homology domain-containing protein 1 isoform X11
- UniProtKB/TrEMBL
-
B7Z7T7
- Related
- ENSP00000461964.1, ENST00000582408.6
- Conserved Domains (2) summary
-
- cd01756
Location:1025 → 1143
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:6 → 75
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_006722388.4 → XP_006722451.1 lipoxygenase homology domain-containing protein 1 isoform X8
- UniProtKB/TrEMBL
-
B7Z7T7
- Conserved Domains (2) summary
-
- cd01756
Location:1087 → 1205
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:6 → 75
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_024451088.2 → XP_024306856.1 lipoxygenase homology domain-containing protein 1 isoform X12
- UniProtKB/TrEMBL
-
J3KRE7
- Conserved Domains (2) summary
-
- cd01756
Location:947 → 1065
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:3 → 88
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_024451086.2 → XP_024306854.1 lipoxygenase homology domain-containing protein 1 isoform X12
- UniProtKB/TrEMBL
-
J3KRE7
- Conserved Domains (2) summary
-
- cd01756
Location:947 → 1065
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:3 → 88
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_024451085.2 → XP_024306853.1 lipoxygenase homology domain-containing protein 1 isoform X10
- UniProtKB/TrEMBL
-
J3KRE7
- Conserved Domains (2) summary
-
- cd01756
Location:1042 → 1160
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:517 → 632
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_011525810.3 → XP_011524112.1 lipoxygenase homology domain-containing protein 1 isoform X13
- Conserved Domains (2) summary
-
- cd01756
Location:410 → 528
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:274 → 375
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_011525811.3 → XP_011524113.1 lipoxygenase homology domain-containing protein 1 isoform X14
See identical proteins and their annotated locations for XP_011524113.1
- UniProtKB/Swiss-Prot
-
Q8IVV2
- Conserved Domains (2) summary
-
- cd01756
Location:393 → 511
- PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
- cl00011
Location:257 → 358
- PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
-
XM_047437290.1 → XP_047293246.1 lipoxygenase homology domain-containing protein 1 isoform X2
-
XM_047437291.1 → XP_047293247.1 lipoxygenase homology domain-containing protein 1 isoform X3
-
XM_047437292.1 → XP_047293248.1 lipoxygenase homology domain-containing protein 1 isoform X4
-
XM_047437293.1 → XP_047293249.1 lipoxygenase homology domain-containing protein 1 isoform X6
- Related
-
ENST00000335730.6
-
XM_047437295.1 → XP_047293251.1 lipoxygenase homology domain-containing protein 1 isoform X9
-
XM_047437294.1 → XP_047293250.1 lipoxygenase homology domain-containing protein 1 isoform X7
Alternate T2T-CHM13v2.0
Genomic
-
NC_060942.1 Alternate T2T-CHM13v2.0
- Range
-
46667522..46847775 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054318177.1 → XP_054174152.1 lipoxygenase homology domain-containing protein 1 isoform X16
- UniProtKB/Swiss-Prot
- B7WNN3, B7WNT1, B7WPI9, H7BZ41, Q6ZRY7, Q86WW9, Q8IVV2, Q96DL7
-
XM_054318176.1 → XP_054174151.1 lipoxygenase homology domain-containing protein 1 isoform X15
- UniProtKB/Swiss-Prot
- B7WNN3, B7WNT1, B7WPI9, H7BZ41, Q6ZRY7, Q86WW9, Q8IVV2, Q96DL7
-
XM_054318181.1 → XP_054174156.1 lipoxygenase homology domain-containing protein 1 isoform X5
-
XM_054318187.1 → XP_054174162.1 lipoxygenase homology domain-containing protein 1 isoform X11
- UniProtKB/TrEMBL
-
B7Z7T7
-
XM_054318184.1 → XP_054174159.1 lipoxygenase homology domain-containing protein 1 isoform X8
- UniProtKB/TrEMBL
-
B7Z7T7
-
XM_054318189.1 → XP_054174164.1 lipoxygenase homology domain-containing protein 1 isoform X12
- UniProtKB/TrEMBL
-
J3KRE7
-
XM_054318188.1 → XP_054174163.1 lipoxygenase homology domain-containing protein 1 isoform X12
- UniProtKB/TrEMBL
-
J3KRE7
-
XM_054318186.1 → XP_054174161.1 lipoxygenase homology domain-containing protein 1 isoform X10
- UniProtKB/TrEMBL
-
J3KRE7
-
XM_054318190.1 → XP_054174165.1 lipoxygenase homology domain-containing protein 1 isoform X13
-
XM_054318191.1 → XP_054174166.1 lipoxygenase homology domain-containing protein 1 isoform X14
-
XM_054318178.1 → XP_054174153.1 lipoxygenase homology domain-containing protein 1 isoform X2
-
XM_054318179.1 → XP_054174154.1 lipoxygenase homology domain-containing protein 1 isoform X3
-
XM_054318180.1 → XP_054174155.1 lipoxygenase homology domain-containing protein 1 isoform X4
-
XM_054318182.1 → XP_054174157.1 lipoxygenase homology domain-containing protein 1 isoform X6
-
XM_054318185.1 → XP_054174160.1 lipoxygenase homology domain-containing protein 1 isoform X9
-
XM_054318183.1 → XP_054174158.1 lipoxygenase homology domain-containing protein 1 isoform X7