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    Smim12 small integral membrane protein 12 [ Mus musculus (house mouse) ]

    Gene ID: 80284, updated on 27-Nov-2024

    Summary

    Official Symbol
    Smim12provided by MGI
    Official Full Name
    small integral membrane protein 12provided by MGI
    Primary source
    MGI:MGI:1933141
    See related
    Ensembl:ENSMUSG00000042380 AllianceGenome:MGI:1933141
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM12 (small integral membrane protein 12). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 22.6), adrenal adult (RPKM 20.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Smim12 in Genome Data Viewer
    Location:
    4 D2.2; 4 61.41 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (127137577..127141602)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127243784..127247809)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene STARR-seq mESC enhancer starr_11423 Neighboring gene DLG associated protein 3 Neighboring gene STARR-seq mESC enhancer starr_11425 Neighboring gene STARR-seq mESC enhancer starr_11428 Neighboring gene predicted gene, 52707 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:126920065-126920248 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:126920954-126921137 Neighboring gene predicted gene, 22221 Neighboring gene crumbs homolog 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • MGC7764

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 12
    Names
    UPF0767 protein C1orf212 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030252.2NP_084528.1  small integral membrane protein 12

      See identical proteins and their annotated locations for NP_084528.1

      Status: VALIDATED

      Source sequence(s)
      AK141221, BQ173894, BY237825
      Consensus CDS
      CCDS38883.1
      UniProtKB/Swiss-Prot
      Q78RX3
      Related
      ENSMUSP00000131941.2, ENSMUST00000142029.2
      Conserved Domains (1) summary
      pfam15990
      Location:187
      UPF0767; UPF0767 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      127137577..127141602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)