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    LOC100909490 uncharacterized LOC100909490 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100909490, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC100909490provided by RGD
    Full Name
    uncharacterized LOC100909490provided by RGD
    Primary source
    RGD:6503267
    See related
    AllianceGenome:RGD:6503267
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Liver (RPKM 28.6), Brain (RPKM 6.5) and 5 other tissues See more
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    Genomic context

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    See LOC100909490 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (140519832..140524904)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (135234810..135239773)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (140650582..140656834)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102972 Neighboring gene palmitoyl-protein thioesterase 1 Neighboring gene cyclase associated actin cytoskeleton regulatory protein 1 Neighboring gene MFSD2 lysolipid transporter A, lysophospholipid Neighboring gene MYCL proto-oncogene, bHLH transcription factor Neighboring gene tRNA isopentenyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      140519832..140524904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001838056.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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