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    Tmem255a transmembrane protein 255A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313453, updated on 9-Dec-2024

    Summary

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    Symbol
    Tmem255aprovided by RGD
    Full Name
    transmembrane protein 255Aprovided by RGD
    Primary source
    RGD:727788
    See related
    EnsemblRapid:ENSRNOG00000028085 AllianceGenome:RGD:727788
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam70a; RGD727788
    Summary
    Predicted to act upstream of or within response to bacterium. Predicted to be located in membrane. Orthologous to human TMEM255A (transmembrane protein 255A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 119.1), Testes (RPKM 55.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem255a in Genome Data Viewer
    Location:
    Xq35
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (121836443..121900718, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (116970793..117035008, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (124400686..124465156, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA48 Neighboring gene zinc finger and BTB domain containing 33 Neighboring gene ATPase Na+/K+ transporting family member beta 4 Neighboring gene TEX13 family member C3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to bacterium ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 255A
    Names
    family with sequence similarity 70, member A
    protein FAM70A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_182822.3 → NP_877974.2  transmembrane protein 255A

      Status: VALIDATED

      Source sequence(s)
      CB580315, CB610453, CB610454, CB706462, CB743366, CV104584, EV775611
      UniProtKB/Swiss-Prot
      Q7TMP6
      UniProtKB/TrEMBL
      F1LQE2
      Related
      ENSRNOP00000032797.4, ENSRNOT00000036472.8
      Conserved Domains (2) summary
      pfam13273
      Location:37 → 105
      DUF4064; Protein of unknown function (DUF4064)
      pfam14967
      Location:9 → 350
      FAM70; FAM70 protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      121836443..121900718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257479.5 → XP_006257541.1  transmembrane protein 255A isoform X1

      UniProtKB/Swiss-Prot
      Q7TMP6
      UniProtKB/TrEMBL
      A0A8I6A1D4
      Related
      ENSRNOP00000084474.1, ENSRNOT00000109556.2
      Conserved Domains (2) summary
      pfam13273
      Location:37 → 105
      DUF4064; Protein of unknown function (DUF4064)
      pfam14967
      Location:9 → 327
      FAM70; FAM70 protein

    2. XM_039099704.2 → XP_038955632.1  transmembrane protein 255A isoform X2

      UniProtKB/TrEMBL
      A0A8I6A8E3
      Conserved Domains (1) summary
      pfam14967
      Location:8 → 303
      FAM70; FAM70 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TMP6.1 GenPept UniProtKB/Swiss-Prot:Q7TMP6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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