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    ydhF putative oxidoreductase YdhF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946960, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydhF
    Official Full Name
    putative oxidoreductase YdhF
    Primary source
    ECOCYC:G6887
    Locus tag
    b1647
    See related
    ASAP:ABE-0005508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1643
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    Genomic context

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    Sequence:
    NC_000913.3 (1724736..1725632, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative membrane fusion protein YdhJ Neighboring gene putative transporter YdhK Neighboring gene superoxide dismutase (Cu-Zn) Neighboring gene DUF1289 domain-containing protein YdhL Neighboring gene DNA-binding transcriptional repressor NemR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli glycogen metabolism is controlled by the PhoP-PhoQ regulatory system at submillimolar environmental Mg2+ concentrations, and is highly interconnected with a wide variety of cellular processes. Montero M, et al. Biochem J, 2009 Oct 23. PMID 19702577
    2. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative oxidoreductase YdhF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1724736..1725632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_025305.1 putative oxidoreductase YdhF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_025305.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8H9VNJ1
      Conserved Domains (1) summary
      COG4989
      Location:2 → 298
      YdhF; Predicted oxidoreductase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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