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    yafJ putative glutamine amidotransferase YafJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944906, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yafJ
    Official Full Name
    putative glutamine amidotransferase YafJ
    Primary source
    ECOCYC:G6107
    Locus tag
    b0223
    See related
    ASAP:ABE-0000755
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0224
    Summary
    YafJ has similarity to proteins of Neisseria gonorrhoeae and Azospirillum brasilense Yu62 . [More information is available at EcoCyc: G6107].
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    Genomic context

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    Sequence:
    NC_000913.3 (244327..245094)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase Neighboring gene D-sedoheptulose 7-phosphate isomerase Neighboring gene peptidoglycan meso-diaminopimelic acid protein amidase A Neighboring gene ribosome-dependent mRNA interferase toxin YafQ Neighboring gene antitoxin/DNA-binding transcriptional repressor DinJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and sequencing of draTG genes and their downstream region of Azospirillum brasilense Yu62. Ma L, et al. Chin J Biotechnol, 1997. PMID 9429775
    2. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Leichert LI, et al. Proc Natl Acad Sci U S A, 2008 Jun 17. PMID 18287020, Free PMC Article
    3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    4. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative glutamine amidotransferase YafJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      244327..245094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414758.1 putative glutamine amidotransferase YafJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414758.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0G073
      Conserved Domains (1) summary
      pfam13230
      Location:1 → 252
      GATase_4; Glutamine amidotransferases class-II
    Nucleotide Protein
    Heading Accession and Version

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