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    ycjF DUF697 domain-containing inner membrane protein YcjF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945878, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ycjF
    Official Full Name
    DUF697 domain-containing inner membrane protein YcjF
    Primary source
    ECOCYC:EG12870
    Locus tag
    b1322
    See related
    ASAP:ABE-0004436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1318
    Summary
    The orthologue of YcjF from an Escherichia coli septicemia strain has been identified as an in vivo-induced gene expressed exclusively during disease in a mouse infection model. [More information is available at EcoCyc: EG12870].
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    Genomic context

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    Sequence:
    NC_000913.3 (1385511..1386572)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane porin G Neighboring gene DNA-binding transcriptional repressor YcjW Neighboring gene DUF463 domain-containing protein YcjX Neighboring gene DNA-binding transcriptional dual regulator TyrR Neighboring gene lipid hydroperoxide peroxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure of the Escherichia coli K12 regulatory gene tyrR. Nucleotide sequence and sites of initiation of transcription and translation. Cornish EC, et al. J Biol Chem, 1986 Jan 5. PMID 3001057
    2. Interplay between the heat shock response and translation in Escherichia coli. Rasouly A, et al. Res Microbiol, 2009 May. PMID 19379808
    3. YbeY, a heat shock protein involved in translation in Escherichia coli. Rasouly A, et al. J Bacteriol, 2009 Apr. PMID 19181801, Free PMC Article
    4. Identification of Escherichia coli genes that are specifically expressed in a murine model of septicemic infection. Khan MA, et al. Infect Immun, 2002 Jul. PMID 12065479, Free PMC Article
    5. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF697 domain-containing inner membrane protein YcjF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1385511..1386572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415838.1 DUF697 domain-containing inner membrane protein YcjF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415838.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      W1EYD4
      Conserved Domains (1) summary
      COG3768
      Location:4 → 352
      YcjF; Uncharacterized membrane protein YcjF, UPF0283 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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