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    ydfD lysis protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946102, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydfD
    Official Full Name
    lysis protein
    Primary source
    ECOCYC:EG11303
    Locus tag
    b1576
    See related
    ASAP:ABE-0005262
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1570
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    Genomic context

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    Sequence:
    NC_000913.3 (1649794..1649985)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YdfC Neighboring gene ncRNA Neighboring gene cell division inhibition protein DicB Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ydfD encodes a novel lytic protein in Escherichia coli. Masuda H, et al. FEMS Microbiol Lett, 2016 Mar. PMID 26887840, Free PMC Article
    2. Identification and sequence of gene dicB: translation of the division inhibitor from an in-phase internal start. Cam K, et al. Nucleic Acids Res, 1988 Jul 25. PMID 3041373, Free PMC Article
    3. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within viral release from host cell by cytolysis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysis protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1649794..1649985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416093.1 lysis protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416093.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376K4L0
      Conserved Domains (1) summary
      pfam07358
      Location:4 → 61
      DUF1482; Protein of unknown function (DUF1482)
    Nucleotide Protein
    Heading Accession and Version

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