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    yjdF DUF2238 domain-containing inner membrane protein YjdF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948634, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjdF
    Official Full Name
    DUF2238 domain-containing inner membrane protein YjdF
    Primary source
    ECOCYC:G7825
    Locus tag
    b4121
    See related
    ASAP:ABE-0013498
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4114
    Summary
    YjdF is an inner membrane protein with six predicted transmembrane domains. [More information is available at EcoCyc: G7825].
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    Genomic context

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    Sequence:
    NC_000913.3 (4344929..4345558, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase Neighboring gene melibiose:H(+)/Na(+)/Li(+) symporter Neighboring gene fumarase B Neighboring gene anaerobic C4-dicarboxylate transporter DcuB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12. Bell PJ, et al. J Bacteriol, 1989 Jun. PMID 2656658, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
    5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF2238 domain-containing inner membrane protein YjdF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4344929..4345558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418545.1 DUF2238 domain-containing inner membrane protein YjdF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418545.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A797I2A0, A0A8T5ZC38
      Conserved Domains (1) summary
      PRK09867
      Location:1 → 209
      PRK09867; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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