U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC104054148 uncharacterized LOC104054148 [ Homo sapiens (human) ]

    Gene ID: 104054148, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC104054148
    Gene description
    uncharacterized LOC104054148
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC104054148 in Genome Data Viewer
    Location:
    8q22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (101984432..101994850)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (103110286..103120702)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (102996660..103007078)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene neurocalcin delta Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:102903930-102904473 Neighboring gene PDCL3 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27738 Neighboring gene uncharacterized LOC124901996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27739 Neighboring gene NANOG hESC enhancer GRCh37_chr8:102948047-102948548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27740 Neighboring gene uncharacterized LOC124901997 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:103078318-103078896 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_100837 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27743 Neighboring gene NANOG hESC enhancer GRCh37_chr8:103124713-103125214 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19435 Neighboring gene microRNA 5680

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

    Go to the top of the page Help

    Clone Names

    • FLJ35818

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126152.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK093137

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      101984432..101994850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      103110286..103120702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials