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    LINC01360 long intergenic non-protein coding RNA 1360 [ Homo sapiens (human) ]

    Gene ID: 101927295, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01360provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1360provided by HGNC
    Primary source
    HGNC:HGNC:50593
    See related
    Ensembl:ENSG00000233973 AllianceGenome:HGNC:50593
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01360 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (73306170..73338877)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (73147685..73180386)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (73771853..73804560)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene endogenous retrovirus group K member 21 Gag polyprotein-like Neighboring gene keratin 8 pseudogene 21 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:73603583-73603746 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:73648977-73650176 Neighboring gene RN7SK pseudogene 19 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:73763727-73764228 Neighboring gene uncharacterized LOC105378801 Neighboring gene uncharacterized LOC107985391

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110676.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL391297, BC041341
      Related
      ENST00000440762.5

    2. NR_110677.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 3' structure and is shorter compare to variant 1.
      Source sequence(s)
      AI674083, AL391297
      Related
      ENST00000411903.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      73306170..73338877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      73147685..73180386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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