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    CREBRF CREB3 regulatory factor [ Homo sapiens (human) ]

    Gene ID: 153222, updated on 9-Dec-2024

    Summary

    Official Symbol
    CREBRFprovided by HGNC
    Official Full Name
    CREB3 regulatory factorprovided by HGNC
    Primary source
    HGNC:HGNC:24050
    See related
    Ensembl:ENSG00000164463 MIM:617109; AllianceGenome:HGNC:24050
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LRF; C5orf41
    Summary
    Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including negative regulation of endoplasmic reticulum unfolded protein response; positive regulation of protein catabolic process; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear body. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in thyroid (RPKM 12.2), bone marrow (RPKM 8.3) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CREBRF in Genome Data Viewer
    Location:
    5q35.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (173056352..173139284)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (173596456..173679391)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (172483355..172566287)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5956 Neighboring gene inorganic pyrophosphatase 1 pseudogene Neighboring gene ATPase H+ transporting V0 subunit e1 Neighboring gene Sharpr-MPRA regulatory region 12761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172444454-172444997 Neighboring gene Sharpr-MPRA regulatory region 4768 Neighboring gene small nucleolar RNA, H/ACA box 74B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16635 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:172508379-172508618 Neighboring gene CDC42 pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172555784-172556284 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:172571727-172572255 Neighboring gene BCL2 interacting protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16636 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:172633891-172634070 Neighboring gene ribosomal protein L7a pseudogene 33

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • DKFZp313F2319, DKFZp686G2059

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    CREB3 regulatory factor
    Names
    UPF0474 protein C5orf41
    adult retina protein
    luman recruitment factor
    luman-recruiting factor
    luman/CREB3 recruitment factor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168393.2NP_001161865.1  CREB3 regulatory factor isoform 2

      See identical proteins and their annotated locations for NP_001161865.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, 3' UTR and coding region, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Both variant 2 and variant 3 encode the same isoform (2).
      Source sequence(s)
      BX647768
      Consensus CDS
      CCDS54948.1
      UniProtKB/Swiss-Prot
      Q8IUR6
      Related
      ENSP00000431107.1, ENST00000522692.5
    2. NM_001168394.2NP_001161866.1  CREB3 regulatory factor isoform 2

      See identical proteins and their annotated locations for NP_001161866.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 3' UTR and coding region, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Both variant 2 and variant 3 encode the same isoform (2).
      Source sequence(s)
      AY174896, BX647768
      Consensus CDS
      CCDS54948.1
      UniProtKB/Swiss-Prot
      Q8IUR6
      Related
      ENSP00000428290.1, ENST00000520420.5
    3. NM_153607.3NP_705835.2  CREB3 regulatory factor isoform 1

      See identical proteins and their annotated locations for NP_705835.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC008378, AY139008, BX647768
      Consensus CDS
      CCDS34293.1
      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
      Related
      ENSP00000296953.2, ENST00000296953.6
      Conserved Domains (1) summary
      cd14809
      Location:525563
      bZIP_AUREO-like; Basic leucine zipper (bZIP) domain of blue light (BL) receptor aureochrome (AUREO) and similar bZIP domains

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      173056352..173139284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005265821.4XP_005265878.1  CREB3 regulatory factor isoform X2

      See identical proteins and their annotated locations for XP_005265878.1

      UniProtKB/TrEMBL
      A8K6L2
      Conserved Domains (1) summary
      cd14809
      Location:517555
      bZIP_AUREO-like; Basic leucine zipper (bZIP) domain of blue light (BL) receptor aureochrome (AUREO) and similar bZIP domains
    2. XM_011534442.2XP_011532744.1  CREB3 regulatory factor isoform X2

      See identical proteins and their annotated locations for XP_011532744.1

      UniProtKB/TrEMBL
      A8K6L2
      Conserved Domains (1) summary
      cd14809
      Location:517555
      bZIP_AUREO-like; Basic leucine zipper (bZIP) domain of blue light (BL) receptor aureochrome (AUREO) and similar bZIP domains
    3. XM_047416801.1XP_047272757.1  CREB3 regulatory factor isoform X1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
    4. XM_047416802.1XP_047272758.1  CREB3 regulatory factor isoform X1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
    5. XM_006714822.5XP_006714885.1  CREB3 regulatory factor isoform X1

      See identical proteins and their annotated locations for XP_006714885.1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
      Conserved Domains (1) summary
      cd14809
      Location:525563
      bZIP_AUREO-like; Basic leucine zipper (bZIP) domain of blue light (BL) receptor aureochrome (AUREO) and similar bZIP domains

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      173596456..173679391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054351768.1XP_054207743.1  CREB3 regulatory factor isoform X2

      UniProtKB/TrEMBL
      A8K6L2
    2. XM_054351767.1XP_054207742.1  CREB3 regulatory factor isoform X2

      UniProtKB/TrEMBL
      A8K6L2
    3. XM_054351764.1XP_054207739.1  CREB3 regulatory factor isoform X1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
    4. XM_054351766.1XP_054207741.1  CREB3 regulatory factor isoform X1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2
    5. XM_054351765.1XP_054207740.1  CREB3 regulatory factor isoform X1

      UniProtKB/Swiss-Prot
      B3DFH2, B3KW49, D3DQM2, F5GXN3, Q5HYG4, Q5HYK0, Q86YR3, Q8IUR6, Q8IZG1
      UniProtKB/TrEMBL
      A8K6L2