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    Mgat4f MGAT4 family, member F [ Mus musculus (house mouse) ]

    Gene ID: 240755, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mgat4fprovided by MGI
    Official Full Name
    MGAT4 family, member Fprovided by MGI
    Primary source
    MGI:MGI:3045320
    See related
    Ensembl:ENSMUSG00000050526 AllianceGenome:MGI:3045320
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933406M09Rik
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Is expressed in ductus deferens and testis. Orthologous to human MGAT4FP (MGAT4 family member F, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 17.4) See more
    Orthologs
    all
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    Genomic context

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    See Mgat4f in Genome Data Viewer
    Location:
    1 E4; 1 58.21 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (134313669..134319240)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (134385931..134391502)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 183A Neighboring gene STARR-seq mESC enhancer starr_02324 Neighboring gene predicted gene, 53477 Neighboring gene STARR-seq mESC enhancer starr_02326 Neighboring gene STARR-seq mESC enhancer starr_02328 Neighboring gene cytochrome b5 reductase 1 Neighboring gene adiponectin receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC240755

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173771.4 → NP_776132.2  uncharacterized protein LOC240755

      See identical proteins and their annotated locations for NP_776132.2

      Status: VALIDATED

      Source sequence(s)
      AK030161, AV283550, BC116694
      Consensus CDS
      CCDS15307.2
      UniProtKB/TrEMBL
      G3XA12, Q8C0N4
      Related
      ENSMUSP00000124251.2, ENSMUST00000162187.2
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 326
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      134313669..134319240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253997.1 → XP_030109857.1  uncharacterized protein LOC240755 isoform X2

      UniProtKB/TrEMBL
      Q8C0N4
      Conserved Domains (1) summary
      pfam04666
      Location:50 → 312
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_006529559.4 → XP_006529622.1  uncharacterized protein LOC240755 isoform X1

      See identical proteins and their annotated locations for XP_006529622.1

      UniProtKB/TrEMBL
      G3XA12, Q8C0N4
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 326
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
    Nucleotide Protein Strain
    Heading Accession and Version

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