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    Ms4a15 membrane-spanning 4-domains, subfamily A, member 15 [ Mus musculus (house mouse) ]

    Gene ID: 545279, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ms4a15provided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 15provided by MGI
    Primary source
    MGI:MGI:3617853
    See related
    Ensembl:ENSMUSG00000067571 AllianceGenome:MGI:3617853
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1286; E530011F12Rik
    Summary
    Predicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human MS4A15 (membrane spanning 4-domains A15). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 10.4) and large intestine adult (RPKM 0.4) See more
    Orthologs
    human all
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    Genomic context

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    See Ms4a15 in Genome Data Viewer
    Location:
    19 A; 19 7.47 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10955667..10970614, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10978303..10993299, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene prostaglandin D2 receptor 2 Neighboring gene STARR-positive B cell enhancer ABC_E5689 Neighboring gene coiled-coil domain containing 86 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10 Neighboring gene STARR-seq mESC enhancer starr_45563 Neighboring gene STARR-positive B cell enhancer ABC_E11021 Neighboring gene STARR-positive B cell enhancer mm9_chr19:11054242-11054543 Neighboring gene membrane-spanning 4-domains, subfamily A, member 18 Neighboring gene predicted gene 28347

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    membrane-spanning 4-domains subfamily A member 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034898.2 → NP_001030070.1  membrane-spanning 4-domains subfamily A member 15 isoform 1

      See identical proteins and their annotated locations for NP_001030070.1

      Status: VALIDATED

      Source sequence(s)
      AK143446
      Consensus CDS
      CCDS29594.1
      UniProtKB/Swiss-Prot
      B2RVI3, Q3UPL6
      Related
      ENSMUSP00000085234.3, ENSMUST00000087923.4
      Conserved Domains (1) summary
      pfam04103
      Location:76 → 198
      CD20; CD20-like family

    2. NM_001404618.1 → NP_001391547.1  membrane-spanning 4-domains subfamily A member 15 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC148991

    3. NM_001404619.1 → NP_001391548.1  membrane-spanning 4-domains subfamily A member 15 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC148991

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      10955667..10970614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3UPL6.1 GenPept UniProtKB/Swiss-Prot:Q3UPL6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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