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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001358795.1 → NP_001345724.1 snRNA-activating protein complex subunit 3 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks alternate 3' coding exons and differs in the 3' coding region and 3' UTR compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK016168, AK049933, BE993334
- Consensus CDS
-
CCDS89770.1
- UniProtKB/TrEMBL
-
Q9CQB0
- Related
- ENSMUSP00000102842.2, ENSMUST00000071544.11
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 269
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
NM_029949.4 → NP_084225.1 snRNA-activating protein complex subunit 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AK049933, BC048713
- Consensus CDS
-
CCDS38792.1
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Related
- ENSMUSP00000030206.4, ENSMUST00000030206.10
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
RNA
-
NR_152448.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains additional 3' exons compared to variant 1. This variant is represented as non-coding because use of the 5' expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK019863, AK049933, BX682545
-
NR_152449.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate internal exon and additional 3' exons compared to variant 1. This variant is represented as non-coding because use of the 5' expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL670851, BX682545
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000070.7 Reference GRCm39 C57BL/6J
- Range
-
83333948..83391256
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011250134.3 → XP_011248436.1 snRNA-activating protein complex subunit 3 isoform X2
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_006538369.4 → XP_006538432.1 snRNA-activating protein complex subunit 3 isoform X2
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_006538370.4 → XP_006538433.1 snRNA-activating protein complex subunit 3 isoform X2
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Related
- ENSMUSP00000124181.2, ENSMUST00000124856.8
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_017320455.2 → XP_017175944.1 snRNA-activating protein complex subunit 3 isoform X2
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_030253911.1 → XP_030109771.1 snRNA-activating protein complex subunit 3 isoform X2
- UniProtKB/Swiss-Prot
- Q8C0A5, Q9D2C9
- Related
- ENSMUSP00000123793.2, ENSMUST00000143533.8
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 399
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_036164546.1 → XP_036020439.1 snRNA-activating protein complex subunit 3 isoform X1
- UniProtKB/TrEMBL
-
V9H0W7
- Conserved Domains (5) summary
-
- cd07557
Location:880 → 967
- trimeric_dUTPase; Trimeric dUTP diphosphatases
- cd03715
Location:18 → 225
- RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
- pfam00665
Location:692 → 788
- rve; Integrase core domain
- pfam17919
Location:309 → 387
- RT_RNaseH_2; RNase H-like domain found in reverse transcriptase
- cl14782
Location:480 → 617
- RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
-
XM_036164547.1 → XP_036020440.1 snRNA-activating protein complex subunit 3 isoform X1
- UniProtKB/TrEMBL
-
V9H0W7
- Conserved Domains (5) summary
-
- cd07557
Location:880 → 967
- trimeric_dUTPase; Trimeric dUTP diphosphatases
- cd03715
Location:18 → 225
- RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
- pfam00665
Location:692 → 788
- rve; Integrase core domain
- pfam17919
Location:309 → 387
- RT_RNaseH_2; RNase H-like domain found in reverse transcriptase
- cl14782
Location:480 → 617
- RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
-
XM_030253916.2 → XP_030109776.1 snRNA-activating protein complex subunit 3 isoform X4
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 268
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_030253915.2 → XP_030109775.1 snRNA-activating protein complex subunit 3 isoform X4
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 268
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_036164548.1 → XP_036020441.1 snRNA-activating protein complex subunit 3 isoform X5
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 220
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_030253914.2 → XP_030109774.1 snRNA-activating protein complex subunit 3 isoform X4
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 268
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
-
XM_030253913.2 → XP_030109773.1 snRNA-activating protein complex subunit 3 isoform X3
- Conserved Domains (1) summary
-
- pfam12251
Location:198 → 269
- zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal