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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001358924.2 → NP_001345853.1 transcriptional repressor CTCF isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3UYZ8
- Conserved Domains (3) summary
-
- COG5048
Location:366 → 500
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:268 → 288
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:509 → 534
- zf-H2C2_2; Zinc-finger double domain
-
NM_001403723.1 → NP_001390652.1 transcriptional repressor CTCF isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403724.1 → NP_001390653.1 transcriptional repressor CTCF isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403725.1 → NP_001390654.1 transcriptional repressor CTCF isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403726.1 → NP_001390655.1 transcriptional repressor CTCF isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403727.1 → NP_001390656.1 transcriptional repressor CTCF isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403728.1 → NP_001390657.1 transcriptional repressor CTCF isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3UYZ8
-
NM_001403729.1 → NP_001390658.1 transcriptional repressor CTCF isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3USR8
-
NM_001403730.1 → NP_001390659.1 transcriptional repressor CTCF isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3USR8
-
NM_001403731.1 → NP_001390660.1 transcriptional repressor CTCF isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3USR8
-
NM_001403732.1 → NP_001390661.1 transcriptional repressor CTCF isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- UniProtKB/TrEMBL
-
Q3USR8
-
NM_181322.4 → NP_851839.1 transcriptional repressor CTCF isoform 1
See identical proteins and their annotated locations for NP_851839.1
Status: VALIDATED
- Source sequence(s)
-
AC127419, AC152826
- Consensus CDS
-
CCDS22606.1
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
- Related
- ENSMUSP00000005841.10, ENSMUST00000005841.16
- Conserved Domains (4) summary
-
- COG5048
Location:366 → 500
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:268 → 288
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:280 → 305
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:351 → 375
- zf-H2C2_5; C2H2-type zinc-finger domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
106351135..106409554
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030243283.2 → XP_030099143.1 transcriptional repressor CTCF isoform X5
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
- Conserved Domains (4) summary
-
- COG5048
Location:366 → 500
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:268 → 288
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:280 → 305
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:351 → 375
- zf-H2C2_5; C2H2-type zinc-finger domain
-
XM_006530646.5 → XP_006530709.1 transcriptional repressor CTCF isoform X3
- UniProtKB/TrEMBL
-
Q3USR8
- Conserved Domains (4) summary
-
- COG5048
Location:375 → 509
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:277 → 297
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:289 → 314
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:360 → 384
- zf-H2C2_5; C2H2-type zinc-finger domain
-
XM_006530647.4 → XP_006530710.1 transcriptional repressor CTCF isoform X4
- UniProtKB/TrEMBL
-
Q3USR8
- Conserved Domains (4) summary
-
- COG5048
Location:375 → 509
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:277 → 297
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:289 → 314
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:360 → 384
- zf-H2C2_5; C2H2-type zinc-finger domain
-
XM_036153746.1 → XP_036009639.1 transcriptional repressor CTCF isoform X5
- UniProtKB/Swiss-Prot
-
Q61164
- UniProtKB/TrEMBL
-
Q3UYZ8
- Conserved Domains (4) summary
-
- COG5048
Location:366 → 500
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:268 → 288
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:280 → 305
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:351 → 375
- zf-H2C2_5; C2H2-type zinc-finger domain
-
XM_036153749.1 → XP_036009642.1 transcriptional repressor CTCF isoform X7
- UniProtKB/TrEMBL
-
Q3USR8
- Conserved Domains (4) summary
-
- COG5048
Location:366 → 500
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:268 → 288
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:280 → 305
- zf-H2C2_2; Zinc-finger double domain
- pfam13909
Location:351 → 375
- zf-H2C2_5; C2H2-type zinc-finger domain
RNA
-
XR_004934760.1 RNA Sequence
-
XR_004934757.1 RNA Sequence
-
XR_004934759.1 RNA Sequence
-
XR_004934758.1 RNA Sequence