NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001047435.2 → NP_001040900.1 partitioning defective 6 homolog alpha isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AC152826, AK158848, BF466814
- Consensus CDS
-
CCDS85601.1
- UniProtKB/TrEMBL
- A0A1D5RLU4, Q3TY70
- Related
- ENSMUSP00000148603.2, ENSMUST00000212430.2
- Conserved Domains (2) summary
-
- cd06403
Location:16 → 95
- PB1_Par6; The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions ...
- cd00992
Location:155 → 246
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001047436.2 → NP_001040901.1 partitioning defective 6 homolog alpha isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon. This encodes a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AC152826, AK158848, BF466814, CX220562
- Consensus CDS
-
CCDS40462.1
- UniProtKB/TrEMBL
- A0A1D5RLU4, D3Z2R1
- Related
- ENSMUSP00000096043.3, ENSMUST00000098444.9
- Conserved Domains (2) summary
-
- cd00992
Location:140 → 231
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl02720
Location:5 → 79
- PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
-
NM_001286344.1 → NP_001273273.1 partitioning defective 6 homolog alpha isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon. This encodes a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AK158848, BF466814, BY099545, CK618363
- UniProtKB/TrEMBL
-
Q3TY70
- Conserved Domains (1) summary
-
- cd00992
Location:9 → 71
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001286345.1 → NP_001273274.1 partitioning defective 6 homolog alpha isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice site in the coding region, compared to variant 1. This encodes a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AC152826, AK158848, BF466814, CX206739
- Consensus CDS
-
CCDS85600.1
- UniProtKB/TrEMBL
-
A0A1D5RLU4
- Related
- ENSMUSP00000148821.2, ENSMUST00000211888.2
- Conserved Domains (2) summary
-
- cd00992
Location:126 → 217
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl02720
Location:16 → 69
- PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
-
NM_019695.3 → NP_062669.2 partitioning defective 6 homolog alpha isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
- Source sequence(s)
-
AC152826, AK158848, BF466814, CX206739
- Consensus CDS
-
CCDS22609.1
- UniProtKB/Swiss-Prot
- Q5RL03, Q6P8R2, Q9Z101
- UniProtKB/TrEMBL
-
A0A1D5RLU4
- Related
- ENSMUSP00000090886.7, ENSMUST00000093195.7
- Conserved Domains (2) summary
-
- cd06403
Location:16 → 95
- PB1_Par6; The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions ...
- cd00992
Location:156 → 247
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
106427780..106430126
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)