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    Fam81b family with sequence similarity 81, member B [ Mus musculus (house mouse) ]

    Gene ID: 238726, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fam81bprovided by MGI
    Official Full Name
    family with sequence similarity 81, member Bprovided by MGI
    Primary source
    MGI:MGI:2685122
    See related
    Ensembl:ENSMUSG00000109228 AllianceGenome:MGI:2685122
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm276
    Summary
    Is expressed in lateral ventricle choroid plexus and metencephalon part of 4th ventricle choroid plexus. Orthologous to human FAM81B (family with sequence similarity 81 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 9.3) See more
    Orthologs
    human all
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    Genomic context

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    See Fam81b in Genome Data Viewer
    Location:
    13 C1; 13 40.96 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (76349827..76427034, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (76201708..76278915, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8536 Neighboring gene STARR-positive B cell enhancer ABC_E2413 Neighboring gene predicted gene, 31161 Neighboring gene arylsulfatase K Neighboring gene STARR-seq mESC enhancer starr_35057 Neighboring gene SKI3 subunit of superkiller complex Neighboring gene STARR-seq mESC enhancer starr_35058 Neighboring gene predicted gene, 31219 Neighboring gene predicted gene, 31516 Neighboring gene STARR-seq mESC enhancer starr_35059 Neighboring gene multiple C2 domains, transmembrane 1 Neighboring gene SCAN domain containing 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM81B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370926.1 → NP_001357855.1  protein FAM81B

      Status: VALIDATED

      Source sequence(s)
      AC154355, CT010470
      UniProtKB/TrEMBL
      A0A140LI28
      Conserved Domains (2) summary
      TIGR02168
      Location:73 → 355
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR03545
      Location:292 → 406
      TIGR03545; TIGR03545 family protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      76349827..76427034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315694.2 → XP_017171183.1  protein FAM81B isoform X1

      UniProtKB/TrEMBL
      A0A140LI28
      Related
      ENSMUSP00000146649.2, ENSMUST00000208418.2
      Conserved Domains (2) summary
      TIGR02168
      Location:30 → 312
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR03545
      Location:249 → 363
      TIGR03545; TIGR03545 family protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Chemical Information
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